Hg_chrom3_TN10mRNA_6709
Organism: Heterodera glycines Gene Locus: chr3:12457506-12461245 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 1.011 | 1.116 | 0.882 | 1.364 | 0.918 | 0.457 | 1.279 | 1.535 | 1.728 | 1.008 | 0.903 | 2.131 | 0.59 | 0.47 | 1.023 | 0.797 | 0.853 | 0.787 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6355
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.876
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.331
|
0.157
|
0.033
|
0.357
|
0.502
|
0.459
|
0.549
|
0.111
|
0.457
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000826
|
5.000
|
1.000
|
Hsc_gene_1980.t1
|
— | — |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.831|GO:0110165_0.816|GO:0008150_0.668|GO:0005622_0.664|GO:0005737_0.616|GO:0016020_0.599|GO:0043226_0.577|GO:0009987_0.562|GO:0043229_0.548
|
IPR000210+23-100_23-131_24-126+|IPR011333+1-157_23-125+|IPR011705+134-245_137-244+
|
SM00225+23-131+|SM00875+134-245+
|
PF00651+24-126+BTB/POZ_domain|PF07707+137-244+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+4-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
44119.730
|
4.630
|
-16.000
|
25.831
|
12.788
|
45.780
|
54.220
|
11.509
|
14.322
|
45.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
132.131
|
724.638
|
100.678
|
17.810
|
13.081
|
13.506
|
76.638
|
28.036
|
4.466
|
209.329
|
121.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.079
|
-5.487
|
-2.390
|
— | — |
2.508
|
0.951
|
1.585
|
— | — | — | — | — |
No JSON data available for plots.