Hg_chrom3_TN10mRNA_6721
Organism: Heterodera glycines Gene Locus: chr3:12548342-12552110 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 1.802 | 1.238 | 0.648 | 1.565 | 0.722 | 0.447 | 0.235 | 1.043 | 1.301 | 1.174 | 0.829 | 2.021 | 0.542 | 1.102 | 1.107 | 0.77 | 0.676 | 1.264 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRNSEKENEENANKRKKAN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.728
|
0.127
|
0.007
|
0.518
|
0.162
|
0.062
|
0.081
|
0.073
|
0.122
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000502
|
6.000
|
1.000
|
Hsc_gene_15067.t1
|
Hsc_gene_15066.t1;Hsc_gene_15068.t1
|
— |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.760|GO:0110165_0.760|GO:0008150_0.729|GO:0005622_0.695|GO:0005737_0.629|GO:0009987_0.623|GO:0043226_0.527|GO:0043229_0.506
|
IPR000210+65-164_68-133_80-162+|IPR002083+271-413_325-415+|IPR008974+321-423+|IPR011333+68-191_81-159+|IPR011705+170-279_180-276+
|
SM00225+65-164+|SM00875+170-279+
|
PF00651+80-162+BTB/POZ_domain|PF07707+180-276+BTB_And_C-terminal_Kelch|PF22486+325-415+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+191-297+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+79-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65
|
1.000
|
66-426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
48901.030
|
4.747
|
-12.000
|
29.812
|
11.502
|
52.817
|
47.183
|
13.615
|
16.197
|
47.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
48.026
|
0.923
|
2.704
|
3.776
|
5.092
|
2.525
|
6.999
|
1.945
|
0.000
|
201.125
|
114.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.897
|
— | — | — | — | — |
1.993
|
-6.504
|
— |
-5.037
|
— |
6.426
|
No JSON data available for plots.