Hg_chrom3_TN10mRNA_6722
Organism: Heterodera glycines Gene Locus: chr3:12553103-12554999 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 2.606 | 0.627 | 0.495 | 0.814 | 1.253 | 0.513 | 1.293 | 1.916 | 1.553 | 1.263 | 1.352 | 1.996 | 0.497 | 0.762 | 0.78 | 0.754 | 0.479 | 1.105 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6367
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
47-97
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.542
|
0.331
|
0.009
|
0.574
|
0.151
|
0.093
|
0.118
|
0.006
|
0.111
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000841
|
2.000
|
4.000
|
Hsc_gene_10532.t1;Hsc_gene_15058.t1;Hsc_gene_15065.t1;Hsc_gene_25097.t1
|
Hsc_gene_15058.t1;Hsc_gene_25097.t1
|
— | — |
KAF7629182.1 PAP_central domain-containing protein [Meloidogyne graminicola]
|
KAJ4389919
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.721|GO:0110165_0.721|GO:0005622_0.667|GO:0016020_0.616|GO:0008150_0.607|GO:0043226_0.603|GO:0043229_0.597|GO:0043227_0.573|GO:0043231_0.564|GO:0003674_0.535
|
IPR007012+50-184+|IPR011068+191-287+
|
— |
PF04928+50-184+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+43-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
40375.650
|
9.904
|
17.500
|
22.989
|
14.080
|
49.138
|
50.862
|
14.655
|
8.333
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
66.610
|
0.980
|
40.786
|
37.568
|
15.121
|
3.648
|
18.340
|
5.378
|
189.693
|
103.465
|
140.420
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.143
|
5.115
|
— |
-1.345
|
-2.039
|
2.338
|
— |
1.904
|
— | — | — | — | — |
No JSON data available for plots.