Hg_chrom3_TN10mRNA_6726
Organism: Heterodera glycines Gene Locus: chr3:12612640-12616020 Feature type: polypeptideProtein Sequence
Length: 674
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.484 | 1.349 | 0.767 | 1.311 | 0.723 | 0.53 | 0.816 | 1.352 | 1.243 | 1.214 | 1.484 | 1.772 | 0.571 | 0.787 | 1.187 | 0.608 | 0.877 | 1.255 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6371
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.297
|
0.022
|
0.264
|
0.640
|
0.314
|
0.320
|
0.141
|
0.184
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.810|GO:0110165_0.796|GO:0008150_0.695|GO:0005622_0.691|GO:0005737_0.583|GO:0009987_0.557|GO:0043226_0.557|GO:0043229_0.544|GO:0016020_0.521
|
IPR000210+68-172_71-151_71-182+|IPR002083+341-472_345-462_346-453_357-475_498-607_515-609+|IPR008974+332-480_481-635+|IPR011333+44-208_54-172+|IPR011705+186-296_189-295+
|
SM00061+346-453_498-607+|SM00225+71-182+|SM00875+186-296+
|
PF00651+68-172+BTB/POZ_domain|PF00917+515-609+MATH_domain|PF07707+189-295+BTB_And_C-terminal_Kelch|PF22486+345-462+MATH_domain
|
— |
PTHR45774+42-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-49
|
1.000
|
50-674
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
77124.620
|
4.883
|
-17.500
|
28.783
|
12.463
|
50.000
|
50.000
|
13.501
|
15.282
|
47.181
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
36.233
|
9.524
|
23.741
|
17.907
|
18.918
|
9.027
|
32.062
|
16.610
|
20.274
|
95.393
|
63.199
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.084
|
0.772
|
— | — |
-1.054
|
1.841
|
— |
1.093
|
— | — | — | — | — |
No JSON data available for plots.