Hg_chrom3_TN10mRNA_6732
Organism: Heterodera glycines Gene Locus: chr3:12639303-12640663 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.028 | 0.603 | 1.334 | 0.552 | 1.133 | 0.395 | 2.21 | 0.982 | 1.792 | 0.753 | 0.65 | 3.069 | 0.744 | 2.142 | 1.026 | 0.453 | 0.502 | 0.425 | 1.3 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6375
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RRRFKRPQKLRRKFG
|
44-84
|
0.999
|
31-56
|
0.941
|
— | — |
0.000
|
— | — |
0.212
|
0.405
|
0.002
|
0.368
|
0.700
|
0.116
|
0.331
|
0.043
|
0.043
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002006
|
3.000
|
1.000
|
Hsc_gene_503.t1
|
Hsc_gene_503.t1
|
— |
P28288.1 ATP-binding cassette sub-family D member 3 [Homo sapiens]
|
KAH7701626.1 CRE-PMP-2 protein, partial [Aphelenchus avenae]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016020|GO:0055085|GO:0140359
|
GO:0008150_0.948|GO:0005575_0.806|GO:0110165_0.806|GO:0009987_0.779|GO:0016020_0.763|GO:0005622_0.716|GO:0043226_0.698|GO:0043229_0.678|GO:0043227_0.673|GO:0043231_0.673|GO:0005737_0.665|GO:0008152_0.644|GO:0044238_0.613|GO:0044237_0.605|GO:0044281_0.564|GO:0006629_0.539|GO:0003674_0.533|GO:0044255_0.533|GO:0006082_0.525|GO:0006631_0.525|GO:0019752_0.525|GO:0032787_0.525|GO:0043436_0.525
|
IPR011527+77-176+|IPR050835+77-176+
|
— |
PF06472+77-176+ABC_transporter_transmembrane_region_2
|
— |
PTHR11384+77-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
8z9x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
21645.240
|
10.405
|
20.000
|
26.519
|
20.442
|
45.304
|
54.696
|
19.890
|
6.630
|
37.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
933.358
|
110.959
|
106.106
|
84.266
|
70.579
|
49.040
|
23.610
|
72.651
|
15.329
|
3877.989
|
2222.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.294
|
-0.534
|
— | — |
-0.511
|
-1.046
|
— |
-1.480
|
-4.613
|
— | — | — | — |
No JSON data available for plots.