Hg_chrom3_TN10mRNA_6747
Organism: Heterodera glycines Gene Locus: chr3:12846131-12848086 Feature type: polypeptideProtein Sequence
Length: 509
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.594 | 1.553 | 1.25 | 0.677 | 1.408 | 0.605 | 0.515 | 0.491 | 1.572 | 1.089 | 1.399 | 0.693 | 2.347 | 0.529 | 1.123 | 1.179 | 0.709 | 0.655 | 1.662 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6390
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
24-58
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.557
|
0.181
|
0.015
|
0.489
|
0.124
|
0.213
|
0.061
|
0.018
|
0.176
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000502
|
6.000
|
1.000
|
Hsc_gene_15067.t1
|
Hsc_gene_15066.t1;Hsc_gene_25098.t1
|
— |
Q6U7I1.1 Ubiquitin carboxyl-terminal hydrolase 7 [Gallus gallus]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.758|GO:0110165_0.756|GO:0008150_0.734|GO:0005622_0.705|GO:0005737_0.631|GO:0009987_0.626|GO:0043226_0.554|GO:0043229_0.542
|
IPR002083+205-340_209-333_210-321_360-496_365-477_365-498+|IPR008974+197-348_349-506+|IPR011333+1-72+|IPR011705+51-160_61-157+
|
SM00061+210-321_365-477+|SM00875+51-160+
|
PF07707+61-157+BTB_And_C-terminal_Kelch|PF22486+209-333_365-498+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+72-178+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+1-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-509
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
59164.170
|
6.389
|
-0.500
|
31.041
|
13.556
|
52.652
|
47.348
|
15.717
|
15.324
|
44.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
10.175
|
1.295
|
2.884
|
7.653
|
5.800
|
2.505
|
13.650
|
2.615
|
0.000
|
30.865
|
17.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.423
|
1.520
|
— | — |
2.448
|
— |
2.517
|
— | — | — | — | — |
No JSON data available for plots.