Hg_chrom3_TN10mRNA_6748
Organism: Heterodera glycines Gene Locus: chr3:12849293-12851345 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.556 | 2.343 | 0.87 | 0.434 | 0.882 | 1.163 | 0.42 | 1.134 | 1.791 | 1.566 | 1.221 | 1.334 | 2.239 | 0.581 | 0.874 | 0.828 | 0.908 | 0.496 | 0.969 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6391
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.345
|
0.011
|
0.543
|
0.133
|
0.132
|
0.130
|
0.009
|
0.128
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000841
|
2.000
|
4.000
|
Hsc_gene_10532.t1;Hsc_gene_15058.t1;Hsc_gene_15065.t1;Hsc_gene_25097.t1
|
Hsc_gene_15058.t1;Hsc_gene_15065.t1;Hsc_gene_25097.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
KAJ4389919
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.722|GO:0110165_0.722|GO:0005622_0.671|GO:0016020_0.615|GO:0008150_0.608|GO:0043226_0.601|GO:0043229_0.599|GO:0043227_0.568|GO:0043231_0.563|GO:0003674_0.530
|
IPR007012+100-234+|IPR011068+240-337+
|
— |
PF04928+100-234+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+2-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-397
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
46240.280
|
9.516
|
13.500
|
24.685
|
13.854
|
50.630
|
49.370
|
14.610
|
10.076
|
42.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
48.112
|
0.763
|
20.532
|
33.071
|
13.474
|
2.854
|
7.091
|
3.140
|
47.005
|
144.890
|
102.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.521
|
5.298
|
0.794
|
-1.324
|
-2.223
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.