Hg_chrom3_TN10mRNA_6753
Organism: Heterodera glycines Gene Locus: chr3:12902177-12902809 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.514 | 1.67 | 1.205 | 0.381 | 1.105 | 1.417 | 0.263 | 1.105 | 1.228 | 1.12 | 0.67 | 0.975 | 2.455 | 1.062 | 1.015 | 1.421 | 1.087 | 0.753 | 0.425 | 0.812 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6396
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.755
|
0.177
|
0.077
|
0.364
|
0.197
|
0.115
|
0.055
|
0.073
|
0.059
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
XP_054482915.1 zinc finger BED domain-containing protein 4-like [Anoplopoma fimbria]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.928|GO:0005575_0.900|GO:0110165_0.893|GO:0009987_0.867|GO:0005622_0.846|GO:0050789_0.845|GO:0065007_0.845|GO:0050794_0.831|GO:0016020_0.820|GO:0003674_0.805|GO:0005737_0.804|GO:0043226_0.801|GO:0043229_0.789|GO:0043227_0.780|GO:0008152_0.778|GO:0043170_0.770|GO:0005488_0.767|GO:0044238_0.767|GO:0043231_0.760|GO:0044237_0.760|GO:0048518_0.760|GO:0009058_0.753|GO:0019222_0.748|GO:0048522_0.748|GO:0009059_0.746|GO:0031323_0.746|GO:0044249_0.746|GO:0005515_0.744|GO:0080090_0.740|GO:0010467_0.738|GO:0060255_0.736|GO:0006139_0.731|GO:0019538_0.725|GO:0009889_0.723|GO:0009893_0.723|GO:0090304_0.723|GO:0031326_0.722|GO:0034654_0.721|GO:0010468_0.719|GO:0010556_0.719|GO:0031325_0.718|GO:0010604_0.713|GO:0141187_0.713|GO:0016070_0.712|GO:0032774_0.711|GO:0009891_0.709|GO:0031328_0.708|GO:0019219_0.705|GO:0006351_0.704|GO:0010557_0.702|GO:0051252_0.702|GO:0044419_0.699|GO:0006355_0.698|GO:2001141_0.698|GO:0036211_0.696|GO:0043412_0.696|GO:0003824_0.693|GO:0045935_0.693|GO:0051254_0.690|GO:1902680_0.688|GO:0045893_0.687|GO:0006366_0.686|GO:0006357_0.683|GO:0097159_0.683|GO:0043687_0.681|GO:0070647_0.681|GO:0071944_0.681|GO:0032446_0.680|GO:0045944_0.678|GO:0018193_0.677|GO:0044403_0.676|GO:0016032_0.675|GO:0016740_0.674|GO:0019058_0.674|GO:0140096_0.673|GO:0003676_0.670|GO:0016925_0.670|GO:0018205_0.670|GO:0019079_0.670|GO:0044788_0.670|GO:0044793_0.670|GO:0044827_0.670|GO:0044828_0.670|GO:0051702_0.670|GO:0051851_0.670|GO:1990466_0.670|GO:0042802_0.667|GO:0003677_0.666|GO:0005886_0.666|GO:0005634_0.664|GO:0016746_0.664|GO:0043565_0.664|GO:0000976_0.663|GO:0001067_0.663|GO:0003690_0.663|GO:0016755_0.663|GO:0019787_0.663|GO:1990837_0.663|GO:0140110_0.661|GO:0030674_0.659|GO:0060090_0.659|GO:0003700_0.658|GO:0061659_0.658|GO:0000987_0.655|GO:0000977_0.654|GO:0001216_0.654|GO:0003712_0.654|GO:0003713_0.654|GO:0000785_0.650|GO:0000978_0.650|GO:0000981_0.650|GO:0001228_0.650|GO:0005694_0.650|GO:0019789_0.650|GO:0043228_0.650|GO:0043232_0.650|GO:0061665_0.650|GO:0005773_0.627|GO:0012505_0.614|GO:0031090_0.587|GO:0031974_0.573|GO:0043233_0.572|GO:0070013_0.570|GO:0031967_0.567|GO:0031981_0.567|GO:0005856_0.566|GO:0015630_0.562|GO:0005654_0.558|GO:0005815_0.556|GO:0005635_0.551|GO:0005813_0.548|GO:0005814_0.548|GO:0016604_0.540|GO:0016605_0.540|GO:0031965_0.540
|
IPR008906+102-178+|IPR012337+8-180+|IPR052035+1-179+
|
— |
PF05699+102-178+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+1-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
20919.390
|
4.848
|
-5.000
|
24.862
|
14.365
|
54.144
|
45.856
|
11.602
|
13.260
|
48.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.007
|
0.310
|
0.143
|
0.246
|
0.497
|
0.245
|
0.308
|
1.096
|
0.000
|
3.340
|
1.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.