Hg_chrom3_TN10mRNA_6755
Organism: Heterodera glycines Gene Locus: chr3:12906678-12919897 Feature type: polypeptideProtein Sequence
Length: 2,390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 1.713 | 0.761 | 0.404 | 2.001 | 1.159 | 0.603 | 1.004 | 1.748 | 1.159 | 1.699 | 1.747 | 1.546 | 0.306 | 0.931 | 0.789 | 0.652 | 0.552 | 0.998 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6398
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKKR,KKVEKK,RKVTKEDEKTRKREEK,RKWRIDGNVNGIIEIKRRI,RKREEKGDEKEEREKKEKG,KRGKEEKMEETERKLIKRK
|
— | — | — | — | — | — |
0.383
|
— | — |
0.551
|
0.166
|
0.009
|
0.539
|
0.097
|
0.115
|
0.083
|
0.023
|
0.120
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000410
|
4.000
|
4.000
|
Hsc_gene_15060.t1;Hsc_gene_15060.t2;Hsc_gene_25094.t1;Hsc_gene_25095.t1
|
Hsc_gene_15058.t1;Hsc_gene_25097.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016779|GO:1990817
|
GO:0005575_0.774|GO:0110165_0.771|GO:0005622_0.751|GO:0043226_0.705|GO:0016020_0.693|GO:0043229_0.682|GO:0043227_0.614|GO:0008150_0.610|GO:0043231_0.567|GO:0003674_0.536|GO:0009987_0.512
|
IPR002934+1893-1945+|IPR007012+2091-2225+|IPR043519+1853-2045_1878-2030+
|
— |
PF01909+1893-1945+Nucleotidyltransferase_domain|PF04928+2091-2225+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1840-1942+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
645-855;1440-1625
|
3.000
|
1-644;856-1439;1626-2390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
279040.900
|
7.034
|
14.000
|
33.975
|
10.921
|
55.356
|
44.644
|
17.782
|
16.192
|
37.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1624.514
|
7.982
|
376.898
|
378.294
|
134.349
|
24.329
|
11.153
|
13.875
|
5659.335
|
2507.669
|
3858.383
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.336
|
5.433
|
— |
-1.524
|
-2.452
|
-1.116
|
-0.916
|
— | — |
-3.732
|
-4.125
|
— | — |
No JSON data available for plots.