Hg_chrom3_TN10mRNA_6758
Organism: Heterodera glycines Gene Locus: chr3:12932057-12936362 Feature type: polypeptideProtein Sequence
Length: 567
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 0.984 | 1.443 | 0.608 | 1.235 | 0.904 | 0.567 | 1.323 | 1.176 | 1.382 | 1.069 | 1.037 | 1.617 | 0.746 | 0.612 | 1.058 | 0.636 | 1.015 | 0.95 | 1.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6401
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.705
|
0.165
|
0.013
|
0.642
|
0.116
|
0.240
|
0.072
|
0.014
|
0.117
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003718
|
2.000
|
1.000
|
Hsc_gene_10537.t1
|
Hsc_gene_5283.t1
|
— | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.740|GO:0110165_0.716|GO:0008150_0.662|GO:0005622_0.656|GO:0005737_0.609|GO:0003674_0.575|GO:0043226_0.556|GO:0043229_0.547
|
IPR000210+9-102_18-87_18-106_119-240_129-213_129-244+|IPR002083+397-532_400-529_402-511+|IPR008974+389-536+|IPR011333+1-108_3-101_113-246_116-239+|IPR011705+248-358_254-355+
|
SM00061+402-511+|SM00225+18-106_129-244+|SM00875+248-358+
|
PF00651+9-102_119-240+BTB/POZ_domain|PF07707+254-355+BTB_And_C-terminal_Kelch|PF22486+400-529+MATH_domain
|
— |
PTHR45774+3-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
552-567
|
1.000
|
1-551
|
4j8z_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
64654.240
|
4.680
|
-22.500
|
28.042
|
14.462
|
47.090
|
52.910
|
12.698
|
15.344
|
47.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
salmon
|
217.730
|
13.025
|
28.754
|
14.451
|
9.444
|
6.415
|
24.189
|
4.718
|
19.864
|
899.797
|
522.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
— |
-0.883
|
— | — |
1.925
|
— |
2.501
|
— | — | — | — | — |
No JSON data available for plots.