Hg_chrom3_TN10mRNA_6763
Organism: Heterodera glycines Gene Locus: chr3:12996918-12998548 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.488 | 1.261 | 0.736 | 1.333 | 0.752 | 0.571 | 0.667 | 1.659 | 1.189 | 1.091 | 0.784 | 2.519 | 0.462 | 1.361 | 1.105 | 0.568 | 0.606 | 1.231 | 0.549 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6406
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
24-58
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.552
|
0.230
|
0.026
|
0.571
|
0.145
|
0.192
|
0.100
|
0.017
|
0.174
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000502
|
6.000
|
1.000
|
Hsc_gene_15067.t1
|
Hsc_gene_25098.t1
|
— |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.747|GO:0110165_0.739|GO:0008150_0.731|GO:0005622_0.692|GO:0005737_0.635|GO:0009987_0.618|GO:0043226_0.532|GO:0043229_0.527
|
IPR002083+205-340_208-333+|IPR008974+197-349+|IPR011333+1-73+|IPR011705+51-160_61-157+
|
SM00875+51-160+
|
PF07707+61-157+BTB_And_C-terminal_Kelch|PF22486+208-333+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+72-178+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+1-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
43521.460
|
6.091
|
-1.500
|
30.133
|
13.867
|
50.667
|
49.333
|
15.200
|
14.933
|
43.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
5.993
|
0.000
|
2.032
|
6.503
|
7.106
|
4.006
|
2.333
|
2.189
|
0.000
|
17.154
|
9.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.366
|
7.130
|
1.780
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.