Hg_chrom3_TN10mRNA_6770
Organism: Heterodera glycines Gene Locus: chr3:13100479-13103326 Feature type: polypeptideProtein Sequence
Length: 649
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.648 | 0.868 | 0.478 | 2.825 | 0.672 | 0.495 | 0.616 | 1.404 | 1.062 | 2.054 | 1.813 | 1.113 | 0.326 | 0.943 | 0.792 | 0.581 | 0.56 | 1.304 | 0.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.819
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKRQEKWEELKKWKE,KKLLEIREKLEENGKKLKE,KKLKENTEKISKERSEKLKESIETNKKRQEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.446
|
0.137
|
0.016
|
0.686
|
0.138
|
0.281
|
0.154
|
0.007
|
0.280
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000541
|
2.000
|
5.000
|
Hsc_gene_14514.t1;Hsc_gene_14518.t1;Hsc_gene_14518.t2;Hsc_gene_14521.t1;Hsc_gene_14535.t1
|
Hsc_gene_14525.t3
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3417990.1 BTB/POZ domain-containing protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0005575_0.800|GO:0110165_0.800|GO:0005622_0.757|GO:0008150_0.705|GO:0043226_0.700|GO:0043229_0.677|GO:0005737_0.669|GO:0009987_0.635|GO:0016020_0.575|GO:0043227_0.528
|
IPR002048+89-124+|IPR008974+458-646+|IPR011705+83-189_91-186+
|
SM00875+83-189+
|
PF07707+91-186+BTB_And_C-terminal_Kelch
|
G3DSA:1.25.40.420:FF:000008+101-208+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+89-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-484
|
2.000
|
1-284;485-649
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
75959.080
|
4.980
|
-19.000
|
41.140
|
7.858
|
59.938
|
40.062
|
19.414
|
21.726
|
37.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
54.211
|
7.943
|
3.712
|
6.987
|
4.038
|
3.376
|
32.607
|
1.397
|
0.000
|
214.648
|
122.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.326
|
— | — | — | — |
3.279
|
— |
4.700
|
-6.802
|
— | — | — | — |
No JSON data available for plots.