Hg_chrom3_TN10mRNA_6771
Organism: Heterodera glycines Gene Locus: chr3:13106868-13109922 Feature type: polypeptideProtein Sequence
Length: 563
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.487 | 1.13 | 0.919 | 1.332 | 0.82 | 0.529 | 0.799 | 1.618 | 1.2 | 1.211 | 0.94 | 1.628 | 0.547 | 0.834 | 1.015 | 0.553 | 0.942 | 1.366 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.566
|
0.155
|
0.050
|
0.577
|
0.133
|
0.195
|
0.060
|
0.041
|
0.178
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003719
|
2.000
|
1.000
|
Hsc_gene_14534.t1
|
Hsc_gene_13742.t1
|
— |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.756|GO:0110165_0.740|GO:0008150_0.678|GO:0005622_0.672|GO:0005737_0.571|GO:0043226_0.542|GO:0043229_0.528|GO:0009987_0.515
|
IPR000210+3-104_8-84_8-115+|IPR002083+271-408_273-389_274-401_428-560_431-562_433-541+|IPR008974+265-416_417-563+|IPR011333+1-104_1-141+|IPR011705+119-226_122-224+
|
SM00061+273-389_433-541+|SM00225+8-115+|SM00875+119-226+
|
PF00651+3-104+BTB/POZ_domain|PF07707+122-224+BTB_And_C-terminal_Kelch|PF22486+274-401_431-562+MATH_domain
|
— |
PTHR45774+1-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-563
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
64038.140
|
5.350
|
-7.500
|
27.886
|
11.901
|
47.957
|
52.043
|
13.677
|
14.210
|
47.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
18.392
|
0.390
|
1.050
|
1.863
|
1.789
|
1.627
|
15.382
|
0.838
|
0.000
|
71.861
|
41.063
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.241
|
— |
4.346
|
-6.981
|
— | — | — | — |
No JSON data available for plots.