Hg_chrom3_TN10mRNA_6774
Organism: Heterodera glycines Gene Locus: chr3:13120779-13123650 Feature type: polypeptideProtein Sequence
Length: 561
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 1.161 | 0.94 | 0.861 | 1.634 | 0.594 | 0.488 | 0.446 | 1.545 | 1.156 | 1.485 | 1.678 | 1.733 | 0.514 | 0.764 | 1.273 | 0.468 | 0.729 | 1.645 | 0.839 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6417
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.523
|
0.186
|
0.013
|
0.554
|
0.134
|
0.186
|
0.076
|
0.019
|
0.165
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002008
|
3.000
|
1.000
|
Hsc_gene_13743.t1
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.770|GO:0110165_0.755|GO:0005622_0.689|GO:0008150_0.675|GO:0005737_0.599|GO:0009987_0.568|GO:0043226_0.539|GO:0043229_0.517
|
IPR000210+10-117_19-96_19-127+|IPR002083+280-400_307-419_439-561_443-555_444-558+|IPR008974+279-426_427-560+|IPR011333+1-153_3-117+|IPR011705+130-241_132-238+
|
SM00061+280-400_444-558+|SM00225+19-127+|SM00875+130-241+
|
PF00651+10-117+BTB/POZ_domain|PF00917+307-419+MATH_domain|PF07707+132-238+BTB_And_C-terminal_Kelch|PF22486+443-555+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+153-257+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+3-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-561
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
64261.790
|
5.417
|
-5.500
|
29.412
|
12.121
|
48.485
|
51.515
|
14.439
|
14.973
|
43.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
107.031
|
0.447
|
2.365
|
1.492
|
1.492
|
8.120
|
9.216
|
0.560
|
0.000
|
459.378
|
262.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.461
|
— |
-3.962
|
4.191
|
— | — | — | — | — |
No JSON data available for plots.