Hg_chrom3_TN10mRNA_6777
Organism: Heterodera glycines Gene Locus: chr3:13130354-13133743 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 1.476 | 1.216 | 0.887 | 1.401 | 0.66 | 0.49 | 0.6 | 1.677 | 1.136 | 1.325 | 0.908 | 1.477 | 0.627 | 0.875 | 1.054 | 0.591 | 0.936 | 1.451 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6419
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.630
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.558
|
0.189
|
0.021
|
0.588
|
0.140
|
0.221
|
0.064
|
0.034
|
0.164
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003719
|
2.000
|
1.000
|
Hsc_gene_14534.t1
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.768|GO:0110165_0.756|GO:0005622_0.690|GO:0008150_0.668|GO:0005737_0.601|GO:0043226_0.565|GO:0043229_0.553|GO:0009987_0.509
|
IPR000210+12-115_19-95_19-126+|IPR002083+282-419_286-421_287-400_439-571_441-552_443-561+|IPR008974+277-428_429-581+|IPR011333+3-152_5-115+|IPR011705+130-240_133-237+
|
SM00061+287-400_441-552+|SM00225+19-126+|SM00875+130-240+
|
PF00651+12-115+BTB/POZ_domain|PF07707+133-237+BTB_And_C-terminal_Kelch|PF22486+286-421_443-561+MATH_domain
|
— |
PTHR45774+11-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-583
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
66395.780
|
5.212
|
-8.500
|
29.331
|
10.978
|
49.228
|
50.772
|
14.237
|
15.094
|
47.513
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
182.540
|
4.748
|
25.060
|
24.596
|
22.511
|
18.305
|
39.875
|
9.357
|
1.028
|
743.673
|
425.397
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.168
|
2.237
|
— | — | — |
1.133
|
-1.067
|
2.231
|
-8.156
|
4.483
|
— | — | — |
No JSON data available for plots.