Hg_chrom3_TN10mRNA_6790
Organism: Heterodera glycines Gene Locus: chr3:13205200-13215768 Feature type: polypeptideProtein Sequence
Length: 623
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.251 | 0.747 | 0.876 | 0.443 | 1.043 | 1.77 | 0.917 | 1.043 | 0.785 | 1.171 | 0.608 | 1.133 | 1.115 | 1.019 | 1.507 | 0.871 | 0.921 | 0.924 | 1.358 | 0.755 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6432
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.775
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRK,KGKRVRER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.362
|
0.289
|
0.035
|
0.589
|
0.131
|
0.257
|
0.158
|
0.012
|
0.354
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008216
|
1.000
|
1.000
|
Hsc_gene_19259.t1
|
— | — |
Q6P112.1 Ral guanine nucleotide dissociation stimulator-like 1 [Danio rerio]
|
KAH7720746.1 RasGEF domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0007264
|
GO:0005575_0.866|GO:0110165_0.860|GO:0005622_0.722|GO:0008150_0.716|GO:0009987_0.627|GO:0003674_0.617|GO:0065007_0.583|GO:0050789_0.570|GO:0050794_0.554|GO:0005488_0.543|GO:0050896_0.521|GO:0005515_0.504
|
IPR000651+61-182_62-185_66-152_70-149+|IPR001895+317-614_321-613_324-562+|IPR008937+82-604+|IPR023578+52-603+|IPR036964+299-608+
|
SM00147+317-614+|SM00229+61-182+
|
PF00617+324-562+RasGEF_domain|PF00618+66-152+RasGEF_N-terminal_motif
|
— |
PTHR23113+82-604+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-299
|
2.000
|
1-147;300-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
69128.110
|
7.911
|
8.500
|
24.559
|
10.433
|
46.388
|
53.612
|
13.483
|
11.075
|
50.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
828.133
|
926.193
|
369.876
|
296.451
|
432.817
|
740.488
|
372.677
|
417.920
|
189.808
|
2147.066
|
1308.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.554
|
-1.781
|
-0.210
|
0.514
|
0.789
|
-0.982
|
-0.917
|
— |
-3.618
|
— | — | — | — |
No JSON data available for plots.