Hg_chrom3_TN10mRNA_6791
Organism: Heterodera glycines Gene Locus: chr3:13217944-13218716 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 0.806 | 0.99 | 1.707 | 1.238 | 1.142 | 0.413 | 0.99 | 1.54 | 1.338 | 0.525 | 0.874 | 2.613 | 0.762 | 1.111 | 0.849 | 0.325 | 1.05 | 0.0 | 1.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6433
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRPR
|
23-43
|
0.985
|
— | — | — | — |
0.011
|
— | — |
0.720
|
0.220
|
0.003
|
0.533
|
0.151
|
0.086
|
0.119
|
0.008
|
0.023
|
0.397
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000020
|
1.000
|
40.000
|
Hsc_gene_10538.t1;Hsc_gene_11802.t1;Hsc_gene_12238.t1;Hsc_gene_14524.t1;Hsc_gene_14531.t1;Hsc_gene_14537.t1;Hsc_gene_15339.t1;Hsc_gene_15339.t2;Hsc_gene_15414.t1;Hsc_gene_16143.t1;Hsc_gene_16145.t1;Hsc_gene_16165.t2;Hsc_gene_16422.t1;Hsc_gene_18188.t1;Hsc_gene_18188.t2;Hsc_gene_18188.t3;Hsc_gene_18211.t1;Hsc_gene_19212.t1;Hsc_gene_19215.t2;Hsc_gene_19236.t1;Hsc_gene_19246.t1;Hsc_gene_19246.t3;Hsc_gene_19253.t1;Hsc_gene_19256.t1;Hsc_gene_19265.t1;Hsc_gene_20822.t1;Hsc_gene_22418.t1;Hsc_gene_24736.t1;Hsc_gene_25532.t1;Hsc_gene_25888.t1;Hsc_gene_2962.t1;Hsc_gene_2962.t2;Hsc_gene_2966.t1;Hsc_gene_2971.t1;Hsc_gene_3393.t1;Hsc_gene_353.t1;Hsc_gene_4604.t1;Hsc_gene_5185.t1;Hsc_gene_5286.t1;Hsc_gene_5286.t2
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3415279.1 BTB/POZ domain-containing protein 1, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.759|GO:0110165_0.753|GO:0005622_0.614|GO:0005737_0.612|GO:0008150_0.601
|
IPR000210+11-108_45-99+|IPR011333+18-108_21-99+|IPR011705+116-171+
|
SM00225+11-108+
|
PF00651+45-99+BTB/POZ_domain|PF07707+116-171+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+49-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-202
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
23074.630
|
4.762
|
-6.000
|
23.762
|
15.347
|
39.604
|
60.396
|
10.891
|
12.871
|
45.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
87.116
|
5.301
|
5.356
|
3.161
|
1.157
|
2.851
|
3.763
|
3.856
|
0.000
|
371.590
|
212.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-9.314
|
— |
-7.846
|
— | — |
No JSON data available for plots.