Hg_chrom3_TN10mRNA_6806
Organism: Heterodera glycines Gene Locus: chr3:13443254-13444327 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.457 | 1.96 | 0.919 | 0.581 | 0.655 | 1.296 | 1.07 | 1.404 | 0.999 | 0.38 | 2.043 | 1.322 | 1.248 | 0.54 | 0.688 | 1.445 | 1.013 | 1.362 | 0.0 | 0.33 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6447
|
— | — |
1.556
|
3.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKEVDEKRGTNKKKDV,NKLGNKRTRKNTQSRGASKAKGIKQEVSKKEVDEKRGTNKKK
|
— | — |
56-85
|
0.830
|
— | — |
0.000
|
— | — |
0.809
|
0.225
|
0.025
|
0.531
|
0.033
|
0.018
|
0.017
|
0.012
|
0.022
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008217
|
1.000
|
1.000
|
Hsc_gene_17627.t1
|
Hsc_gene_17627.t1
|
— |
P51968.1 Heterogeneous nuclear ribonucleoprotein A3 homolog 1 [Xenopus laevis]
|
XP_015214505.1 PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform X1 [Lepisosteus oculatus];XP_015214507.1 PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform X1 [Lepisosteus oculatus]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.848|GO:0110165_0.842|GO:0005622_0.780|GO:0008150_0.763|GO:0043226_0.722|GO:0043229_0.715|GO:0003674_0.698|GO:0005488_0.670|GO:0016020_0.646|GO:0009987_0.638|GO:0043227_0.614|GO:0097159_0.605|GO:0003676_0.604|GO:0043231_0.603|GO:0003723_0.584
|
IPR000504+41-117_42-113_43-90+|IPR012677+22-143+|IPR035979+11-128+
|
SM00360+42-113+
|
PF00076+43-90+RNA_recognition_motif
|
— |
PTHR48033+6-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45;105-178
|
1.000
|
46-104
|
1x4b_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
19492.040
|
10.539
|
16.500
|
28.652
|
8.427
|
58.427
|
41.573
|
19.663
|
8.989
|
56.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
7.282
|
0.303
|
0.286
|
0.683
|
0.980
|
1.003
|
0.201
|
1.631
|
8.293
|
23.733
|
17.116
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.