Hg_chrom3_TN10mRNA_6812
Organism: Heterodera glycines Gene Locus: chr3:13504178-13504847 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.346 | 1.531 | 0.726 | 1.754 | 0.27 | 0.501 | 0.263 | 1.404 | 0.782 | 1.754 | 1.238 | 1.754 | 0.405 | 0.537 | 1.429 | 0.69 | 0.877 | 2.429 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6453
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.644
|
0.329
|
0.081
|
0.269
|
0.232
|
0.149
|
0.042
|
0.044
|
0.292
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000102
|
13.000
|
2.000
|
Hsc_gene_11204.t1;Hsc_gene_22419.t1
|
— | — | — |
KAH7716481.1 Peptidase C19 [Aphelenchus avenae]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.914|GO:0009987_0.850|GO:0003674_0.815|GO:0065007_0.780|GO:0005575_0.772|GO:0110165_0.772|GO:0050789_0.770|GO:0005622_0.735|GO:0003824_0.708|GO:0005737_0.699|GO:0043226_0.683|GO:0016787_0.680|GO:0016020_0.673|GO:0140096_0.670|GO:0043229_0.667|GO:0008233_0.660|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0043227_0.642|GO:0043231_0.631|GO:0008152_0.601|GO:0050794_0.586|GO:0071840_0.578|GO:0044237_0.577|GO:0043170_0.574|GO:0009058_0.571|GO:0016043_0.569|GO:0044249_0.561|GO:0009059_0.555|GO:0010467_0.552|GO:0065008_0.528|GO:0031647_0.515|GO:0005634_0.510|GO:0006325_0.506|GO:0006338_0.505
|
IPR002083+40-177_44-179+|IPR008974+24-186+
|
— |
PF22486+44-179+MATH_domain
|
— |
PTHR47022+34-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
21876.600
|
4.567
|
-8.500
|
33.684
|
12.105
|
54.737
|
45.263
|
14.737
|
18.947
|
47.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
cyan
|
4.327
|
1.597
|
5.420
|
5.531
|
2.474
|
3.660
|
17.336
|
3.575
|
1.382
|
3.049
|
2.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.651
|
— | — | — |
2.255
|
— |
2.419
|
— | — | — | — | — |
No JSON data available for plots.