Hg_chrom3_TN10mRNA_6813
Organism: Heterodera glycines Gene Locus: chr3:13506269-13509126 Feature type: polypeptideProtein Sequence
Length: 588
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.463 | 1.33 | 0.762 | 1.332 | 0.392 | 0.688 | 0.68 | 1.55 | 1.172 | 1.211 | 1.0 | 1.748 | 0.654 | 0.972 | 1.118 | 0.474 | 0.876 | 1.439 | 0.75 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6454
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.768
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.640
|
0.166
|
0.020
|
0.588
|
0.178
|
0.212
|
0.047
|
0.023
|
0.146
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q8K2J9.3 BTB/POZ domain-containing protein 6 [Mus musculus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.778|GO:0110165_0.775|GO:0005622_0.721|GO:0008150_0.686|GO:0005737_0.620|GO:0009987_0.549|GO:0043226_0.548|GO:0043229_0.545|GO:0003674_0.510
|
IPR000210+5-115_14-93_14-124+|IPR002083+290-422_291-422_292-401_294-422_441-577_443-556_445-577+|IPR008974+281-428_429-584+|IPR011333+1-150_2-115+|IPR011705+127-238_131-237+
|
SM00061+292-401_443-556+|SM00225+14-124+|SM00875+127-238+
|
PF00651+5-115+BTB/POZ_domain|PF07707+131-237+BTB_And_C-terminal_Kelch|PF22486+294-422_445-577+MATH_domain
|
— |
PTHR45774+2-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-588
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
66729.890
|
5.071
|
-11.000
|
29.422
|
12.075
|
47.959
|
52.041
|
14.116
|
15.306
|
48.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
74.862
|
37.705
|
69.505
|
56.179
|
71.787
|
40.030
|
54.153
|
37.543
|
18.412
|
176.124
|
108.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
0.438
|
— | — |
-0.828
|
— | — |
0.669
|
-3.383
|
— | — | — | — |
No JSON data available for plots.