Hg_chrom3_TN10mRNA_6814
Organism: Heterodera glycines Gene Locus: chr3:13506269-13512410 Feature type: polypeptideProtein Sequence
Length: 585
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.471 | 1.212 | 0.766 | 1.368 | 0.394 | 0.712 | 0.684 | 1.595 | 1.178 | 1.217 | 0.905 | 1.757 | 0.69 | 0.942 | 1.123 | 0.476 | 0.855 | 1.446 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6454
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.768
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.167
|
0.028
|
0.573
|
0.166
|
0.211
|
0.049
|
0.025
|
0.143
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9M8J9.1 BTB/POZ and MATH domain-containing protein 2 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.777|GO:0110165_0.774|GO:0005622_0.717|GO:0008150_0.687|GO:0005737_0.633|GO:0009987_0.567|GO:0043226_0.549|GO:0043229_0.545|GO:0003674_0.526
|
IPR000210+2-111_11-90_11-121+|IPR002083+287-419_288-419_289-398_291-419_438-574_440-553_442-574+|IPR008974+278-425_426-581+|IPR011333+1-147_2-111+|IPR011705+125-235_128-234+
|
SM00061+289-398_440-553+|SM00225+11-121+|SM00875+125-235+
|
PF00651+2-111+BTB/POZ_domain|PF07707+128-234+BTB_And_C-terminal_Kelch|PF22486+291-419_442-574+MATH_domain
|
— |
PTHR45774+3-249+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-585
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
66279.470
|
5.202
|
-9.000
|
28.889
|
12.137
|
47.521
|
52.479
|
14.017
|
14.872
|
48.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
74.862
|
37.705
|
69.505
|
56.179
|
71.787
|
40.030
|
54.153
|
37.543
|
18.412
|
176.124
|
108.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
0.438
|
— | — |
-0.828
|
— | — |
0.669
|
-3.383
|
— | — | — | — |
No JSON data available for plots.