Hg_chrom3_TN10mRNA_6815
Organism: Heterodera glycines Gene Locus: chr3:13520289-13520961 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.371 | 1.732 | 1.354 | 0.917 | 1.241 | 0.682 | 0.697 | 0.0 | 1.418 | 1.006 | 1.531 | 0.626 | 1.921 | 0.614 | 0.76 | 1.064 | 1.134 | 0.725 | 2.046 | 0.782 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6455
|
— | — |
2.111
|
3.000
|
1.000
|
3.000
|
2.000
|
1.000
|
4.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.424
|
0.057
|
0.290
|
0.199
|
0.155
|
0.043
|
0.095
|
0.240
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000102
|
13.000
|
2.000
|
Hsc_gene_11204.t1;Hsc_gene_22419.t1
|
— | — | — |
XP_040571278.1 ubiquitin carboxyl-terminal hydrolase 7-like [Lepeophtheirus salmonis]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.914|GO:0009987_0.851|GO:0003674_0.827|GO:0065007_0.784|GO:0050789_0.771|GO:0005575_0.756|GO:0110165_0.756|GO:0003824_0.719|GO:0005622_0.706|GO:0005737_0.682|GO:0016787_0.681|GO:0140096_0.670|GO:0043226_0.663|GO:0008233_0.661|GO:0016020_0.659|GO:0043229_0.656|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0043227_0.632|GO:0043231_0.627|GO:0008152_0.612|GO:0050794_0.589|GO:0044237_0.585|GO:0009058_0.580|GO:0043170_0.573|GO:0044249_0.564|GO:0071840_0.563|GO:0016043_0.556|GO:0009059_0.553|GO:0010467_0.549|GO:0065008_0.532|GO:0031647_0.519|GO:0006325_0.503|GO:0006338_0.502
|
IPR002083+39-175_42-177+|IPR008974+30-184+
|
— |
PF22486+42-177+MATH_domain
|
— |
PTHR47022+24-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
21646.460
|
5.129
|
-2.000
|
28.723
|
12.234
|
53.191
|
46.809
|
13.830
|
14.894
|
48.936
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
4.317
|
0.078
|
1.808
|
1.383
|
1.626
|
2.937
|
3.039
|
0.815
|
0.691
|
13.985
|
8.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.243
|
3.935
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.