Hg_chrom3_TN10mRNA_6816
Organism: Heterodera glycines Gene Locus: chr3:13523427-13525286 Feature type: polypeptideProtein Sequence
Length: 454
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.461 | 1.537 | 1.081 | 0.911 | 1.505 | 0.791 | 0.656 | 0.441 | 1.615 | 1.042 | 1.268 | 0.777 | 1.468 | 0.339 | 0.944 | 1.385 | 0.903 | 0.701 | 2.203 | 0.972 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6456
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.571
|
0.207
|
0.016
|
0.501
|
0.173
|
0.178
|
0.067
|
0.020
|
0.180
|
0.240
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002010
|
1.000
|
3.000
|
Hsc_gene_22425.t1;Hsc_gene_22425.t2;Hsc_gene_26576.t1
|
— | — |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.756|GO:0110165_0.756|GO:0005622_0.696|GO:0008150_0.669|GO:0043226_0.652|GO:0005737_0.639|GO:0043229_0.635|GO:0003674_0.582|GO:0009987_0.560|GO:0016020_0.556
|
IPR002083+148-284_149-287_150-265_152-286_304-442_306-421_308-442+|IPR008974+141-292_293-450+|IPR011705+4-104_10-99+
|
SM00061+150-265_306-421+|SM00875+4-104+
|
PF07707+10-99+BTB_And_C-terminal_Kelch|PF22486+152-286_308-442+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+16-117+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+10-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
454-454
|
1.000
|
1-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
52379.020
|
5.117
|
-7.000
|
28.855
|
12.335
|
53.744
|
46.256
|
13.877
|
14.978
|
46.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
magenta
|
6.137
|
1.610
|
6.283
|
7.980
|
3.860
|
3.770
|
13.860
|
3.764
|
1.382
|
10.391
|
6.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.739
|
2.172
|
— |
-1.077
|
— |
1.883
|
— |
2.015
|
— | — | — | — | — |
No JSON data available for plots.