Hg_chrom3_TN10mRNA_6818
Organism: Heterodera glycines Gene Locus: chr3:13534553-13536297 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 0.902 | 0.705 | 0.297 | 1.293 | 1.326 | 0.718 | 0.862 | 1.149 | 1.689 | 1.502 | 1.521 | 1.437 | 0.912 | 1.583 | 0.431 | 0.636 | 0.653 | 1.326 | 1.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6458
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm|extracellular
|
— |
NWKRKRRRMRRRWR,RKCQLIQQKNWKRKRRRMR
|
18-50
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.245
|
0.361
|
0.022
|
0.533
|
0.324
|
0.097
|
0.199
|
0.010
|
0.066
|
0.981
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000300
|
7.000
|
2.000
|
Hsc_gene_13553.t1;Hsc_gene_19336.t1
|
— | — |
Q21355.1 Glutathione S-transferase 4 [Caenorhabditis elegans]
|
KAI1709035.1 putative glutathione S-transferase 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.830|GO:0003674_0.724|GO:0009987_0.688|GO:0005575_0.676|GO:0110165_0.672|GO:0005622_0.630|GO:0003824_0.581|GO:0005737_0.558|GO:0050896_0.517|GO:0008152_0.511|GO:0016740_0.509
|
IPR004045+27-106_41-100+|IPR004046+145-228+|IPR010987+108-232+|IPR036249+31-103+|IPR036282+104-230+|IPR040079+32-217+|IPR050213+35-229+
|
— |
PF02798+41-100+Glutathione_S-transferase,_N-terminal_domain|PF14497+145-228+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR11571+35-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
27419.990
|
10.213
|
16.000
|
31.034
|
13.362
|
46.983
|
53.017
|
19.397
|
11.638
|
35.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
4.483
|
7.081
|
2.847
|
2.499
|
3.463
|
12.430
|
12.174
|
3.996
|
0.000
|
2.928
|
1.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.550
|
-1.638
|
— | — |
1.858
|
— |
-1.742
|
1.751
|
— | — | — | — | — |
No JSON data available for plots.