Hg_chrom3_TN10mRNA_6819
Organism: Heterodera glycines Gene Locus: chr3:13545022-13551598 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 1.128 | 0.672 | 0.876 | 1.078 | 1.48 | 0.77 | 1.386 | 1.18 | 1.592 | 0.63 | 1.087 | 1.283 | 1.11 | 1.178 | 0.66 | 0.492 | 1.015 | 1.421 | 0.815 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6459
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.048
|
0.070
|
0.013
|
0.126
|
0.426
|
0.101
|
0.093
|
0.006
|
0.523
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000843
|
4.000
|
2.000
|
Hsc_gene_11643.t1;Hsc_gene_14342.t1
|
— | — |
Q19746.2 Innexin-3 [Caenorhabditis elegans]
|
KAH7726044.1 innexin inx-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.872|GO:0110165_0.869|GO:0008150_0.831|GO:0009987_0.723|GO:0065007_0.594|GO:0030054_0.587|GO:0003674_0.577|GO:0050789_0.566|GO:0051179_0.542|GO:0006810_0.535|GO:0051234_0.535|GO:0032501_0.517|GO:0005911_0.513|GO:0070161_0.513
|
IPR000210+33-61+|IPR000990+109-433_113-334_115-333_164-173_194-216_289-303+|IPR011333+24-86+
|
— |
PF00651+33-61+BTB/POZ_domain|PF00876+115-333+Innexin
|
— |
PTHR11893+113-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
421-433
|
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
48680.140
|
7.227
|
5.000
|
22.864
|
12.009
|
41.109
|
58.891
|
12.702
|
10.162
|
46.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
3.153
|
2.467
|
9.375
|
4.634
|
2.510
|
2.245
|
11.267
|
2.074
|
0.000
|
0.828
|
0.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.699
|
— |
-0.908
|
— | — |
2.338
|
— |
2.589
|
— | — | — | — | — |
No JSON data available for plots.