Hg_chrom3_TN10mRNA_6821
Organism: Heterodera glycines Gene Locus: chr3:13560308-13561376 Feature type: polypeptideProtein Sequence
Length: 175
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 1.595 | 1.039 | 0.394 | 1.048 | 0.44 | 0.544 | 1.143 | 1.651 | 1.158 | 1.645 | 1.681 | 2.222 | 0.549 | 0.35 | 0.735 | 0.468 | 1.126 | 0.0 | 1.176 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6461
|
— | — |
1.556
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.946
|
1.000
|
0.000
|
0.000
|
0.804
|
0.192
|
0.034
|
0.662
|
0.066
|
0.119
|
0.055
|
0.004
|
0.076
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000401
|
7.000
|
1.000
|
Hsc_gene_16485.t1
|
— | — |
Q6DDV0.1 Myoneurin [Xenopus laevis]
|
KAI3408210.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.861|GO:0005575_0.819|GO:0110165_0.781|GO:0005622_0.725|GO:0009987_0.695|GO:0005737_0.576|GO:0016020_0.568|GO:0003674_0.542|GO:0043226_0.535|GO:0043229_0.528
|
IPR000210+44-148_53-112_53-150+|IPR011333+26-149_35-147+
|
SM00225+53-150+
|
PF00651+44-148+BTB/POZ_domain
|
— |
PTHR24413+38-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
19756.940
|
7.883
|
3.000
|
26.857
|
14.286
|
43.429
|
56.571
|
14.857
|
12.000
|
46.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
9.536
|
0.149
|
0.699
|
4.013
|
1.145
|
1.490
|
0.202
|
0.280
|
3.084
|
36.414
|
22.130
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.585
|
2.596
|
— | — | — | — | — | — | — | — | — | — |