Hg_chrom3_TN10mRNA_6822
Organism: Heterodera glycines Gene Locus: chr3:13571735-13576750 Feature type: polypeptideProtein Sequence
Length: 564
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.443 | 1.128 | 0.673 | 1.507 | 0.591 | 0.654 | 0.798 | 1.812 | 1.126 | 1.397 | 1.356 | 1.675 | 0.546 | 0.868 | 1.089 | 0.581 | 0.806 | 1.5 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6462
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.617
|
0.265
|
0.025
|
0.557
|
0.128
|
0.228
|
0.070
|
0.017
|
0.167
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.786|GO:0110165_0.786|GO:0008150_0.702|GO:0005622_0.688|GO:0005737_0.594|GO:0009987_0.566|GO:0043226_0.539|GO:0043229_0.527
|
IPR000210+2-105_11-77_11-108+|IPR002083+267-398_269-379_272-391_418-551_420-532_423-544+|IPR008974+257-406_407-558+|IPR011333+1-138_2-105+|IPR011705+115-225_118-223+
|
SM00061+269-379_420-532+|SM00225+11-108+|SM00875+115-225+
|
PF00651+2-105+BTB/POZ_domain|PF07707+118-223+BTB_And_C-terminal_Kelch|PF22486+272-391_423-544+MATH_domain
|
— |
PTHR45774+3-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-564
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
64670.940
|
5.632
|
-5.500
|
30.319
|
11.879
|
50.000
|
50.000
|
15.071
|
15.248
|
44.504
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
113.873
|
0.679
|
11.374
|
25.682
|
3.634
|
3.027
|
2.529
|
6.012
|
100.118
|
403.253
|
273.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.822
|
5.087
|
1.284
|
-2.854
|
— | — | — | — | — | — |
-6.528
|
— | — |
No JSON data available for plots.