Hg_chrom3_TN10mRNA_6823
Organism: Heterodera glycines Gene Locus: chr3:13588647-13591879 Feature type: polypeptideProtein Sequence
Length: 591
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 1.377 | 1.354 | 0.934 | 1.325 | 0.607 | 0.544 | 0.592 | 1.429 | 1.372 | 1.384 | 1.194 | 1.504 | 0.553 | 0.76 | 1.136 | 0.416 | 0.949 | 1.302 | 0.647 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6463
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.873
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.610
|
0.185
|
0.019
|
0.644
|
0.152
|
0.231
|
0.071
|
0.046
|
0.141
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.756|GO:0110165_0.742|GO:0005622_0.669|GO:0008150_0.646|GO:0005737_0.562|GO:0043226_0.539|GO:0043229_0.526|GO:0009987_0.517
|
IPR000210+16-123_25-102_25-133+|IPR002083+292-424_293-427_294-405_296-414_445-580_449-580_450-559+|IPR008974+283-432_433-587+|IPR011333+3-159_6-122+|IPR011705+137-247_142-243+
|
SM00061+294-405_450-559+|SM00225+25-133+|SM00875+137-247+
|
PF00651+16-123+BTB/POZ_domain|PF07707+142-243+BTB_And_C-terminal_Kelch|PF22486+296-414_449-580+MATH_domain
|
— |
PTHR45774+10-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-591
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
66858.550
|
5.017
|
-11.500
|
29.442
|
10.491
|
48.223
|
51.777
|
14.044
|
15.398
|
47.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
45.236
|
14.751
|
36.645
|
28.949
|
31.200
|
28.722
|
31.980
|
36.747
|
0.514
|
119.150
|
68.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.082
|
0.835
|
— | — | — | — | — | — |
-7.149
|
5.229
|
— | — | — |
No JSON data available for plots.