Hg_chrom3_TN10mRNA_6824
Organism: Heterodera glycines Gene Locus: chr3:13592329-13593901 Feature type: polypeptideProtein Sequence
Length: 264
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 1.762 | 1.033 | 1.045 | 0.947 | 0.68 | 0.767 | 0.568 | 1.768 | 1.024 | 1.435 | 0.891 | 2.104 | 0.437 | 0.928 | 0.92 | 1.056 | 0.689 | 2.331 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6464
|
— | — |
1.444
|
3.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
17-38
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.613
|
0.390
|
0.037
|
0.228
|
0.158
|
0.222
|
0.106
|
0.027
|
0.289
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000102
|
13.000
|
2.000
|
Hsc_gene_11204.t1;Hsc_gene_22419.t1
|
— | — | — |
KAI3415241.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002083+1-112_1-131_2-123_151-264_153-257+|IPR008974+1-139_145-249+
|
SM00061+1-112_153-257+
|
PF22486+2-123+MATH_domain
|
— |
PTHR47022+137-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-264
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
30382.860
|
8.846
|
8.500
|
26.515
|
13.636
|
49.621
|
50.379
|
15.152
|
11.364
|
46.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
5.162
|
0.157
|
7.745
|
3.638
|
3.178
|
0.758
|
2.238
|
1.531
|
4.146
|
12.258
|
8.781
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.421
|
4.426
|
-0.980
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.