Hg_chrom3_TN10mRNA_6826
Organism: Heterodera glycines Gene Locus: chr3:13603711-13606744 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 1.228 | 1.376 | 0.911 | 1.585 | 0.497 | 0.524 | 0.528 | 1.369 | 1.19 | 1.307 | 1.657 | 1.809 | 0.576 | 0.826 | 1.132 | 0.52 | 0.827 | 1.219 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6466
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.836
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.182
|
0.019
|
0.594
|
0.174
|
0.214
|
0.064
|
0.038
|
0.156
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.744|GO:0110165_0.743|GO:0005622_0.693|GO:0008150_0.673|GO:0005737_0.631|GO:0009987_0.563|GO:0043226_0.531|GO:0043229_0.517
|
IPR000210+16-123_25-102_25-133+|IPR002083+287-381_313-389_313-403_421-555_426-536_426-557+|IPR008974+281-408_409-565+|IPR011333+2-129_7-122+|IPR011705+137-240_144-237+
|
SM00061+287-381_426-536+|SM00225+25-133+|SM00875+137-240+
|
PF00651+16-123+BTB/POZ_domain|PF07707+144-237+BTB_And_C-terminal_Kelch|PF22486+313-389_426-557+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+152-257+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+11-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-568
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
64685.690
|
4.632
|
-22.000
|
30.810
|
11.268
|
49.120
|
50.880
|
13.732
|
17.077
|
46.831
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
17.338
|
5.545
|
14.669
|
12.261
|
10.453
|
8.496
|
26.144
|
14.563
|
0.000
|
41.303
|
23.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.175
|
1.010
|
— | — | — |
1.629
|
— |
0.982
|
— |
4.473
|
— | — | — |
No JSON data available for plots.