Hg_chrom3_TN10mRNA_6832
Organism: Heterodera glycines Gene Locus: chr3:13687602-13690756 Feature type: polypeptideProtein Sequence
Length: 682
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.5 | 1.333 | 1.062 | 1.344 | 0.564 | 0.593 | 0.733 | 1.434 | 1.209 | 1.244 | 1.035 | 1.751 | 0.592 | 0.928 | 1.11 | 0.505 | 0.933 | 1.805 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.211
|
0.013
|
0.586
|
0.179
|
0.289
|
0.064
|
0.022
|
0.207
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9M8J9.1 BTB/POZ and MATH domain-containing protein 2 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.799|GO:0110165_0.797|GO:0005622_0.711|GO:0008150_0.640|GO:0005737_0.611|GO:0043226_0.530|GO:0009987_0.523|GO:0043229_0.520
|
IPR000210+9-118_18-97_18-128+|IPR002083+294-425_295-428_296-406_298-415_446-582_448-563_450-572+|IPR008974+285-433_434-593+|IPR011333+5-154_7-118+|IPR011705+132-242_135-241+
|
SM00061+296-406_448-563+|SM00225+18-128+|SM00875+132-242+
|
PF00651+9-118+BTB/POZ_domain|PF07707+135-241+BTB_And_C-terminal_Kelch|PF22486+298-415_450-572+MATH_domain
|
— |
PTHR45774+7-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-682
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
78443.330
|
5.078
|
-13.000
|
29.619
|
12.757
|
49.120
|
50.880
|
14.223
|
15.396
|
47.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
129.996
|
51.462
|
267.307
|
172.498
|
172.952
|
210.490
|
104.872
|
274.119
|
6.681
|
93.585
|
56.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.150
|
1.609
|
-0.524
|
— |
0.298
|
-0.999
|
— |
-1.248
|
— | — | — | — | — |
No JSON data available for plots.