Hg_chrom3_TN10mRNA_6835
Organism: Heterodera glycines Gene Locus: chr3:13698296-13700560 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.388 | 0.995 | 0.858 | 1.327 | 1.021 | 0.296 | 0.746 | 1.769 | 1.95 | 1.206 | 1.463 | 1.797 | 0.383 | 1.117 | 1.066 | 0.489 | 0.452 | 0.765 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6475
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
4.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.797
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.582
|
0.246
|
0.019
|
0.575
|
0.251
|
0.191
|
0.042
|
0.072
|
0.064
|
0.380
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008218
|
1.000
|
1.000
|
Hsc_gene_19217.t1
|
— | — | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.819|GO:0110165_0.817|GO:0005622_0.746|GO:0005737_0.655|GO:0043226_0.632|GO:0043229_0.620|GO:0008150_0.564
|
IPR000210+1-44+|IPR011333+1-39_1-71+|IPR011705+48-158_51-157+
|
SM00875+48-158+
|
PF00651+1-44+BTB/POZ_domain|PF07707+51-157+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+1-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
23487.280
|
7.168
|
1.500
|
28.358
|
11.940
|
48.756
|
51.244
|
14.925
|
13.433
|
37.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
53.895
|
0.000
|
0.000
|
11.934
|
0.555
|
0.513
|
0.506
|
0.268
|
0.000
|
230.624
|
131.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.005
|
8.317
|
-4.413
|
— | — | — | — |
-8.614
|
4.434
|
-8.126
|
— | — |
No JSON data available for plots.