Hg_chrom3_TN10mRNA_6839
Organism: Heterodera glycines Gene Locus: chr3:13729113-13732293 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.429 | 1.241 | 0.883 | 1.365 | 0.569 | 0.65 | 0.683 | 1.479 | 1.314 | 1.396 | 1.004 | 1.754 | 0.624 | 0.766 | 1.048 | 0.671 | 0.879 | 1.313 | 0.502 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6479
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.653
|
0.245
|
0.017
|
0.525
|
0.109
|
0.159
|
0.046
|
0.038
|
0.189
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.771|GO:0110165_0.771|GO:0005622_0.704|GO:0008150_0.703|GO:0005737_0.593|GO:0043226_0.566|GO:0009987_0.565|GO:0043229_0.548
|
IPR000210+2-111_11-90_11-121+|IPR002083+280-415_281-418_284-405_285-396_436-569_440-571_441-550+|IPR008974+271-424_425-579+|IPR011333+1-147_2-111+|IPR011705+125-235_128-231+
|
SM00061+285-396_441-550+|SM00225+11-121+|SM00875+125-235+
|
PF00651+2-111+BTB/POZ_domain|PF07707+128-231+BTB_And_C-terminal_Kelch|PF22486+284-405_440-571+MATH_domain
|
— |
PTHR45774+3-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
66408.960
|
5.292
|
-8.000
|
29.352
|
11.092
|
49.147
|
50.853
|
14.334
|
15.017
|
47.440
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
18.862
|
13.274
|
26.992
|
19.688
|
33.938
|
17.261
|
28.288
|
11.311
|
2.410
|
24.180
|
14.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
— | — |
0.753
|
-0.961
|
— | — |
1.461
|
— | — | — | — | — |
No JSON data available for plots.