Hg_chrom3_TN10mRNA_6840
Organism: Heterodera glycines Gene Locus: chr3:13735316-13740048 Feature type: polypeptideProtein Sequence
Length: 596
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 1.366 | 1.22 | 0.636 | 1.594 | 0.516 | 0.639 | 0.671 | 1.678 | 1.134 | 1.449 | 1.086 | 1.585 | 0.581 | 0.685 | 1.151 | 0.605 | 0.915 | 1.291 | 0.987 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6480
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.954
|
0.999
|
0.000
|
0.000
|
0.586
|
0.184
|
0.032
|
0.603
|
0.157
|
0.289
|
0.055
|
0.011
|
0.181
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — |
Q6DDV0.1 Myoneurin [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.795|GO:0110165_0.792|GO:0008150_0.710|GO:0005622_0.692|GO:0009987_0.616|GO:0005737_0.612|GO:0043226_0.543|GO:0043229_0.520|GO:0003674_0.502
|
IPR000210+44-148_53-112_53-150+|IPR002083+309-439_311-420_314-432_459-591_461-572_463-584+|IPR008974+297-449_450-595+|IPR011333+29-180_35-147+|IPR011705+158-267_162-265+
|
SM00061+311-420_461-572+|SM00225+53-150+|SM00875+158-267+
|
PF00651+44-148+BTB/POZ_domain|PF07707+162-265+BTB_And_C-terminal_Kelch|PF22486+314-432_463-584+MATH_domain
|
— |
PTHR45774+38-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-596
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
68175.560
|
4.870
|
-16.000
|
30.537
|
12.081
|
50.168
|
49.832
|
14.262
|
16.275
|
45.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
334.184
|
1.393
|
15.247
|
208.683
|
20.556
|
5.744
|
3.142
|
8.424
|
884.358
|
700.091
|
779.062
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.233
|
7.106
|
3.887
|
-3.378
|
-1.823
|
— | — |
-1.286
|
— | — |
-4.786
|
— | — |