Hg_chrom3_TN10mRNA_6841
Organism: Heterodera glycines Gene Locus: chr3:13743155-13747909 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.439 | 1.095 | 0.577 | 1.449 | 0.643 | 0.657 | 0.753 | 1.672 | 1.152 | 1.495 | 1.18 | 1.579 | 0.611 | 0.717 | 1.194 | 0.548 | 0.836 | 1.544 | 0.836 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6481
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
AKIKMK,RKSETMHIKGLQWKIKAK
|
— | — | — | — | — |
0.828
|
0.246
|
0.000
|
— |
0.582
|
0.180
|
0.029
|
0.583
|
0.128
|
0.271
|
0.056
|
0.012
|
0.170
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.801|GO:0110165_0.781|GO:0008150_0.729|GO:0005622_0.703|GO:0005737_0.589|GO:0009987_0.561|GO:0043226_0.546|GO:0043229_0.532
|
IPR000210+44-148_53-112_53-150+|IPR002083+309-440_311-421_314-437_460-593_462-574_466-586+|IPR008974+297-447_448-597+|IPR011333+30-180_35-147+|IPR011705+158-267_162-265+
|
SM00061+311-421_462-574+|SM00225+53-150+|SM00875+158-267+
|
PF00651+44-148+BTB/POZ_domain|PF07707+162-265+BTB_And_C-terminal_Kelch|PF22486+314-437_466-586+MATH_domain
|
— |
PTHR45774+37-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-598
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
68297.970
|
5.952
|
-3.500
|
29.599
|
12.040
|
50.000
|
50.000
|
14.883
|
14.716
|
45.318
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
109.684
|
4.695
|
16.864
|
54.044
|
10.254
|
5.182
|
4.669
|
8.801
|
117.248
|
352.741
|
251.816
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.625
|
3.393
|
1.782
|
-2.436
|
— | — | — | — | — | — |
-4.733
|
— | — |