Hg_chrom3_TN10mRNA_6845
Organism: Heterodera glycines Gene Locus: chr3:13773481-13776765 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.453 | 1.29 | 0.874 | 1.464 | 0.39 | 0.623 | 0.676 | 1.426 | 1.119 | 1.229 | 1.093 | 1.924 | 0.617 | 0.965 | 1.134 | 0.498 | 0.793 | 1.429 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.619
|
0.175
|
0.016
|
0.624
|
0.194
|
0.206
|
0.057
|
0.020
|
0.148
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9M8J9.1 BTB/POZ and MATH domain-containing protein 2 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.778|GO:0110165_0.771|GO:0008150_0.720|GO:0005622_0.719|GO:0005737_0.632|GO:0009987_0.584|GO:0043226_0.548|GO:0043229_0.537|GO:0003674_0.511
|
IPR000210+5-115_14-93_14-124+|IPR002083+290-425_292-404_294-425_444-579_446-560_448-577+|IPR008974+281-432_433-588+|IPR011333+1-124_2-115+|IPR011705+128-238_131-237+
|
SM00061+292-404_446-560+|SM00225+14-124+|SM00875+128-238+
|
PF00651+5-115+BTB/POZ_domain|PF07707+131-237+BTB_And_C-terminal_Kelch|PF22486+294-425_448-577+MATH_domain
|
— |
PTHR45774+2-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-592
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
67605.700
|
4.935
|
-14.000
|
30.068
|
12.838
|
48.818
|
51.182
|
14.189
|
15.878
|
47.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
18.586
|
8.921
|
14.476
|
11.335
|
10.200
|
6.377
|
29.863
|
7.688
|
6.593
|
43.046
|
27.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.233
|
— |
2.095
|
— | — | — | — | — |
No JSON data available for plots.