Hg_chrom3_TN10mRNA_6847
Organism: Heterodera glycines Gene Locus: chr3:13781465-13783553 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.925 | 1.067 | 1.446 | 0.949 | 1.172 | 0.706 | 0.655 | 0.917 | 1.563 | 1.653 | 1.019 | 1.439 | 1.614 | 0.941 | 0.999 | 1.005 | 0.251 | 0.695 | 0.47 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6487
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.496
|
0.269
|
0.020
|
0.741
|
0.141
|
0.196
|
0.081
|
0.021
|
0.107
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q8K2J9.3 BTB/POZ domain-containing protein 6 [Mus musculus]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.802|GO:0110165_0.786|GO:0005622_0.699|GO:0008150_0.698|GO:0005737_0.635|GO:0009987_0.593|GO:0043226_0.577|GO:0043229_0.555
|
IPR000210+9-118_18-97_18-128+|IPR011333+2-154_4-118+|IPR011705+131-242_135-239+
|
SM00225+18-128+|SM00875+131-242+
|
PF00651+9-118+BTB/POZ_domain|PF07707+135-239+BTB_And_C-terminal_Kelch
|
G3DSA:1.25.40.420:FF:000008+154-260+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+2-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-327
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
36665.220
|
4.936
|
-8.000
|
28.440
|
10.092
|
44.343
|
55.657
|
13.456
|
14.985
|
46.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
cyan
|
13.570
|
10.414
|
28.014
|
19.837
|
21.677
|
7.959
|
18.322
|
6.343
|
0.000
|
17.157
|
9.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.193
|
0.793
|
— | — |
-1.431
|
1.210
|
— |
1.671
|
— |
5.167
|
— | — | — |
No JSON data available for plots.