Hg_chrom3_TN10mRNA_6850
Organism: Heterodera glycines Gene Locus: chr3:13797146-13798041 Feature type: polypeptideProtein Sequence
Length: 130
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 1.61 | 1.259 | 0.0 | 0.897 | 0.394 | 0.641 | 1.538 | 1.709 | 1.04 | 1.515 | 1.81 | 2.137 | 0.592 | 0.314 | 0.879 | 0.504 | 1.049 | 0.592 | 1.357 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6490
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.944
|
0.999
|
0.000
|
0.000
|
0.842
|
0.167
|
0.024
|
0.628
|
0.052
|
0.142
|
0.038
|
0.002
|
0.060
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000401
|
7.000
|
1.000
|
Hsc_gene_16485.t1
|
— | — |
Q6DDV0.1 Myoneurin [Xenopus laevis]
|
KAI3422673.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.822|GO:0005575_0.815|GO:0110165_0.743|GO:0005622_0.693|GO:0016020_0.602|GO:0003674_0.593|GO:0043226_0.581|GO:0009987_0.575|GO:0043229_0.568|GO:0043227_0.549|GO:0043231_0.549|GO:0005488_0.503|GO:0005737_0.502
|
IPR000210+44-127_53-112+|IPR011333+27-129_36-128+
|
— |
PF00651+44-127+BTB/POZ_domain
|
— |
PTHR24413+37-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
14755.950
|
6.880
|
1.000
|
26.923
|
16.154
|
44.615
|
55.385
|
14.615
|
12.308
|
46.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
5.784
|
0.000
|
0.278
|
0.321
|
0.688
|
0.624
|
0.613
|
0.955
|
0.000
|
24.002
|
13.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |