Hg_chrom3_TN10mRNA_6855
Organism: Heterodera glycines Gene Locus: chr3:13831010-13831463 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.304 | 1.699 | 0.322 | 1.09 | 0.479 | 0.779 | 0.0 | 0.831 | 0.884 | 1.416 | 1.649 | 2.596 | 0.539 | 0.763 | 1.736 | 0.153 | 1.416 | 1.438 | 0.275 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6495
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.502
|
0.134
|
0.136
|
0.455
|
0.173
|
0.123
|
0.043
|
0.003
|
0.233
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000102
|
13.000
|
2.000
|
Hsc_gene_11204.t1;Hsc_gene_22419.t1
|
— | — |
Q6U7I1.1 Ubiquitin carboxyl-terminal hydrolase 7 [Gallus gallus]
|
XP_040571278.1 ubiquitin carboxyl-terminal hydrolase 7-like [Lepeophtheirus salmonis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.908|GO:0009987_0.831|GO:0065007_0.794|GO:0050789_0.789|GO:0003674_0.782|GO:0005575_0.738|GO:0110165_0.732|GO:0065008_0.685|GO:0005622_0.673|GO:0031647_0.670|GO:0003824_0.668|GO:0016787_0.661|GO:0140096_0.656|GO:0008233_0.654|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0043226_0.638|GO:0005737_0.637|GO:0016020_0.627|GO:0043229_0.623|GO:0043227_0.589|GO:0043231_0.585|GO:0050794_0.552|GO:0005488_0.538|GO:0005515_0.523|GO:0008152_0.510|GO:0009058_0.504|GO:0044237_0.504|GO:0043170_0.503|GO:0044238_0.503
|
IPR008974+14-107+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-107
|
9k2x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
12010.560
|
4.672
|
-3.000
|
28.972
|
12.150
|
49.533
|
50.467
|
13.084
|
15.888
|
53.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.868
|
2.510
|
4.590
|
4.809
|
3.881
|
1.230
|
3.555
|
1.223
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.