Hg_chrom3_TN10mRNA_6857
Organism: Heterodera glycines Gene Locus: chr3:13836320-13839947 Feature type: polypeptideProtein Sequence
Length: 602
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.391 | 0.966 | 0.573 | 1.523 | 0.809 | 0.653 | 0.664 | 1.772 | 1.212 | 1.435 | 1.075 | 1.707 | 0.383 | 0.78 | 1.281 | 0.626 | 0.705 | 1.406 | 0.831 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6497
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.587
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKREYTDVQFLVGKDGKK
|
— | — | — | — |
1-22
|
0.991
|
1.000
|
0.000
|
0.000
|
0.575
|
0.169
|
0.027
|
0.602
|
0.124
|
0.223
|
0.053
|
0.009
|
0.183
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.810|GO:0110165_0.810|GO:0008150_0.722|GO:0005622_0.705|GO:0043226_0.603|GO:0005737_0.588|GO:0043229_0.584|GO:0009987_0.578|GO:0016020_0.544
|
IPR000210+52-156_61-120_61-158+|IPR002083+317-446_319-427_322-439_466-597_468-578_470-590+|IPR008974+306-455_456-601+|IPR011333+30-188_42-155+|IPR011705+166-275_170-274+
|
SM00061+319-427_468-578+|SM00225+61-158+|SM00875+166-275+
|
PF00651+52-156+BTB/POZ_domain|PF07707+170-274+BTB_And_C-terminal_Kelch|PF22486+322-439_470-590+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+188-294+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+34-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
68892.570
|
5.992
|
-3.000
|
29.070
|
12.126
|
50.997
|
49.003
|
14.618
|
14.452
|
43.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
124.878
|
3.003
|
26.929
|
458.926
|
91.380
|
13.401
|
10.309
|
11.872
|
75.722
|
258.617
|
180.233
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.940
|
7.127
|
4.200
|
-2.357
|
-2.756
|
— | — | — | — | — | — | — | — |