Hg_chrom3_TN10mRNA_6860
Organism: Heterodera glycines Gene Locus: chr3:13855153-13858640 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.774 | 1.125 | 1.1 | 1.043 | 1.546 | 0.827 | 0.72 | 0.302 | 1.837 | 1.199 | 1.008 | 0.593 | 2.016 | 0.659 | 0.987 | 0.864 | 0.694 | 0.764 | 1.241 | 0.889 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.254
|
0.026
|
0.534
|
0.182
|
0.187
|
0.095
|
0.041
|
0.211
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000559
|
2.000
|
5.000
|
Hsc_gene_16140.t1;Hsc_gene_19231.t1;Hsc_gene_19231.t2;Hsc_gene_25887.t1;Hsc_gene_4606.t1
|
— | — |
P58545.2 BTB/POZ domain-containing protein 3 [Mus musculus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.769|GO:0110165_0.762|GO:0005622_0.670|GO:0005737_0.645|GO:0008150_0.593|GO:0043226_0.534|GO:0009987_0.526|GO:0043229_0.519
|
IPR002083+204-334_207-335_209-315_357-479_358-460+|IPR008974+198-345_346-487+|IPR011333+1-72+|IPR011705+51-157_53-152+
|
SM00061+209-315_358-460+|SM00875+51-157+
|
PF07707+53-152+BTB_And_C-terminal_Kelch|PF22486+207-335_357-479+MATH_domain
|
— |
PTHR45774+1-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
56567.540
|
4.603
|
-17.500
|
27.419
|
12.500
|
45.766
|
54.234
|
12.097
|
15.323
|
45.363
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
35.645
|
0.447
|
4.955
|
7.088
|
4.411
|
2.012
|
9.937
|
2.214
|
1.382
|
143.260
|
82.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.212
|
3.825
|
— | — | — |
2.309
|
— |
2.309
|
-5.759
|
— | — | — | — |
No JSON data available for plots.