Hg_chrom3_TN10mRNA_6861
Organism: Heterodera glycines Gene Locus: chr3:13872484-13873795 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.426 | 1.218 | 1.428 | 0.542 | 1.483 | 0.268 | 0.561 | 0.524 | 1.629 | 1.274 | 1.666 | 1.54 | 1.163 | 0.503 | 0.641 | 1.122 | 0.687 | 1.111 | 2.416 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6501
|
— | — |
1.778
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.273
|
0.119
|
0.355
|
0.125
|
0.408
|
0.158
|
0.289
|
0.322
|
0.428
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000065
|
13.000
|
6.000
|
Hsc_gene_12165.t1;Hsc_gene_12167.t1;Hsc_gene_15114.t1;Hsc_gene_16150.t1;Hsc_gene_16487.t1;Hsc_gene_16489.t1
|
— | — | — |
KAI1704693.1 BTB/POZ domain-containing protein [Ditylenchus destructor]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002083+52-186_76-179+|IPR008974+40-190+
|
— |
PF22486+76-179+MATH_domain
|
— |
PTHR46162+10-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
22099.370
|
4.996
|
-4.000
|
31.937
|
11.518
|
50.262
|
49.738
|
15.183
|
16.754
|
45.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
29.629
|
1.906
|
6.981
|
127.667
|
12.068
|
2.263
|
1.618
|
2.231
|
8.799
|
65.003
|
40.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.641
|
5.924
|
4.288
|
-3.436
|
-2.400
|
— | — | — | — |
4.030
|
— | — | — |
No JSON data available for plots.