Hg_chrom3_TN10mRNA_6862
Organism: Heterodera glycines Gene Locus: chr3:13880627-13883006 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 1.188 | 1.32 | 0.742 | 1.254 | 0.551 | 0.608 | 0.941 | 1.553 | 1.38 | 1.14 | 1.265 | 1.717 | 0.724 | 1.042 | 1.114 | 0.264 | 0.896 | 1.034 | 1.028 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6502
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.583
|
0.163
|
0.030
|
0.680
|
0.187
|
0.245
|
0.101
|
0.009
|
0.146
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q96PQ7.3 Kelch-like protein 5 [Homo sapiens]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.778|GO:0110165_0.775|GO:0008150_0.739|GO:0005622_0.713|GO:0009987_0.648|GO:0005737_0.584
|
IPR000210+9-119_18-97_18-128+|IPR008974+285-365+|IPR011333+2-155_4-120+|IPR011705+132-242_135-241+
|
SM00225+18-128+|SM00875+132-242+
|
PF00651+9-119+BTB/POZ_domain|PF07707+135-241+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+3-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-372
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
42537.760
|
5.517
|
-4.500
|
29.301
|
12.903
|
45.968
|
54.032
|
14.516
|
14.785
|
45.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
165.898
|
88.951
|
340.083
|
239.522
|
261.433
|
367.764
|
176.525
|
409.087
|
5.529
|
15.397
|
11.168
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.707
|
1.292
|
-0.398
|
— |
0.506
|
-1.051
|
— |
-1.074
|
— |
5.687
|
4.048
|
— | — |
No JSON data available for plots.