Hg_chrom3_TN10mRNA_6864
Organism: Heterodera glycines Gene Locus: chr3:13889940-13890775 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.683 | 1.435 | 0.681 | 1.316 | 0.506 | 0.47 | 0.329 | 1.316 | 1.334 | 1.595 | 1.161 | 2.193 | 0.253 | 0.806 | 1.034 | 0.755 | 0.997 | 1.012 | 0.58 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6504
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.610
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKIGVANVLQLFELFRKR,KKIGVANVLQLFELFRKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.532
|
0.274
|
0.022
|
0.530
|
0.093
|
0.110
|
0.043
|
0.039
|
0.151
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.912|GO:0009987_0.857|GO:0003674_0.813|GO:0065007_0.764|GO:0050789_0.749|GO:0005488_0.747|GO:0050794_0.743|GO:0005515_0.728|GO:0003824_0.707|GO:0065008_0.689|GO:0016787_0.676|GO:0031647_0.675|GO:0140096_0.663|GO:0008233_0.658|GO:0005575_0.654|GO:0110165_0.651|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0005622_0.614|GO:0005737_0.584|GO:0016020_0.578|GO:0043226_0.563|GO:0043229_0.561|GO:0043227_0.526|GO:0043231_0.520|GO:0008152_0.438|GO:0050896_0.432|GO:0044238_0.424|GO:0044237_0.420|GO:0009058_0.419|GO:0071840_0.410|GO:0032991_0.407|GO:0043170_0.407|GO:0051179_0.405|GO:0051716_0.403|GO:0044249_0.400|GO:0016043_0.397|GO:0006810_0.396|GO:0051234_0.396|GO:0009059_0.394|GO:0006950_0.392|GO:0019538_0.388|GO:0006139_0.385|GO:0010467_0.380|GO:0051641_0.378|GO:0005829_0.377|GO:0033554_0.373|GO:0019222_0.372|GO:0044281_0.372|GO:0006996_0.370|GO:0048519_0.370|GO:0034654_0.369|GO:0051649_0.368|GO:0031323_0.367|GO:0048518_0.367|GO:0090304_0.367|GO:0007154_0.366|GO:0023052_0.366|GO:0048523_0.364|GO:0060255_0.364|GO:0009056_0.363|GO:0080090_0.363|GO:0016070_0.362|GO:0048522_0.362|GO:0007165_0.361|GO:0009889_0.360|GO:0031326_0.360|GO:0141187_0.360|GO:0044419_0.359|GO:0010556_0.358|GO:0046907_0.358|GO:0032774_0.357|GO:0097159_0.357|GO:0016192_0.356|GO:0032879_0.356|GO:0010468_0.355|GO:0043412_0.354|GO:0048583_0.354|GO:0009057_0.353|GO:0005634_0.352|GO:0010646_0.352|GO:0023051_0.352|GO:0051049_0.352|GO:0051128_0.352|GO:0036211_0.351|GO:0051246_0.351
|
IPR002083+1-96_9-86+|IPR008974+2-120+
|
— |
PF22486+9-86+MATH_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
17522.040
|
5.347
|
-1.500
|
30.921
|
11.842
|
51.974
|
48.026
|
15.132
|
15.789
|
46.053
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6.719
|
10.107
|
14.077
|
8.722
|
10.737
|
6.601
|
8.788
|
9.640
|
0.000
|
3.645
|
2.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.