Hg_chrom3_TN10mRNA_6867
Organism: Heterodera glycines Gene Locus: chr3:13914826-13917871 Feature type: polypeptideProtein Sequence
Length: 660
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.621 | 0.964 | 0.731 | 1.414 | 0.699 | 0.685 | 0.682 | 1.515 | 1.044 | 1.217 | 1.515 | 1.726 | 0.728 | 0.928 | 1.255 | 0.695 | 0.712 | 1.049 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6507
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.692
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.197
|
0.025
|
0.560
|
0.148
|
0.273
|
0.080
|
0.028
|
0.178
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.775|GO:0110165_0.764|GO:0005622_0.716|GO:0008150_0.701|GO:0005737_0.619|GO:0043226_0.603|GO:0043229_0.586|GO:0009987_0.554|GO:0003674_0.537|GO:0016020_0.501
|
IPR000210+75-181_78-160_78-191+|IPR002083+357-492_358-492_359-471_361-492_511-647_513-628_515-645+|IPR008974+348-499_500-656+|IPR011333+51-217_61-181+|IPR011705+195-305_198-304+
|
SM00061+359-471_513-628+|SM00225+78-191+|SM00875+195-305+
|
PF00651+75-181+BTB/POZ_domain|PF07707+198-304+BTB_And_C-terminal_Kelch|PF22486+361-492_515-645+MATH_domain
|
— |
PTHR45774+60-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55
|
1.000
|
56-660
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
74612.770
|
5.957
|
-3.500
|
27.727
|
11.061
|
50.455
|
49.545
|
13.939
|
13.788
|
48.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
26.521
|
4.912
|
14.085
|
66.822
|
16.437
|
10.810
|
33.270
|
12.087
|
35.935
|
29.668
|
32.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.288
|
3.632
|
2.352
|
-2.052
|
— |
1.631
|
— |
1.600
|
— | — | — | — | — |
No JSON data available for plots.