Hg_chrom3_TN10mRNA_6873
Organism: Heterodera glycines Gene Locus: chr3:14018348-14021532 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.368 | 1.193 | 0.936 | 1.244 | 0.58 | 0.7 | 0.566 | 1.659 | 1.223 | 1.097 | 0.799 | 1.885 | 0.653 | 0.923 | 0.937 | 0.408 | 0.857 | 0.87 | 1.065 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6513
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.644
|
0.159
|
0.021
|
0.661
|
0.183
|
0.177
|
0.089
|
0.024
|
0.176
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_16145.t1;Hsc_gene_3393.t1
|
— |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.781|GO:0110165_0.774|GO:0008150_0.692|GO:0005622_0.691|GO:0043226_0.595|GO:0005737_0.582|GO:0043229_0.575|GO:0009987_0.503
|
IPR000210+2-110_11-90_11-121+|IPR002083+287-419_291-419+|IPR008974+278-426+|IPR011333+1-148_2-110+|IPR011705+125-235_128-234+
|
SM00225+11-121+|SM00875+125-235+
|
PF00651+2-110+BTB/POZ_domain|PF07707+128-234+BTB_And_C-terminal_Kelch|PF22486+291-419+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+147-252+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+3-249+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-442
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
49845.980
|
5.059
|
-7.500
|
26.923
|
12.670
|
44.118
|
55.882
|
12.896
|
14.027
|
47.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
272.067
|
6.037
|
19.054
|
158.227
|
20.350
|
6.752
|
23.590
|
7.620
|
286.416
|
884.867
|
628.388
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.429
|
4.574
|
3.160
|
-2.996
|
-1.576
|
1.811
|
— |
1.768
|
— | — |
-5.302
|
— | — |
No JSON data available for plots.