Hg_chrom3_TN10mRNA_6874
Organism: Heterodera glycines Gene Locus: chr3:14024586-14025458 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.61 | 1.259 | 1.592 | 0.641 | 0.789 | 0.549 | 1.154 | 1.538 | 0.936 | 0.466 | 1.357 | 1.709 | 0.888 | 0.785 | 0.769 | 1.387 | 1.049 | 1.183 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6514
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.023
|
— | — |
0.049
|
0.082
|
0.031
|
0.211
|
0.114
|
0.087
|
0.115
|
0.008
|
0.126
|
0.976
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001243
|
4.000
|
1.000
|
Hsc_gene_7627.t1
|
Hsc_gene_7627.t1
|
— | — |
RNA26073.1 serine protease 33-like [Brachionus plicatilis]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.764|GO:0005575_0.733|GO:0110165_0.724|GO:0003674_0.684|GO:0008152_0.615|GO:0044238_0.580|GO:0003824_0.577|GO:0043170_0.569|GO:0019538_0.560|GO:0016787_0.528|GO:0005576_0.524|GO:0006508_0.520|GO:0009987_0.516|GO:0140096_0.512|GO:0008233_0.508
|
IPR001254+65-125+|IPR009003+38-121+|IPR043504+46-128+
|
— |
PF00089+65-125+Trypsin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
14608.600
|
4.759
|
-3.500
|
20.000
|
13.846
|
43.846
|
56.154
|
9.231
|
10.769
|
56.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
3.766
|
0.000
|
0.000
|
0.122
|
0.245
|
0.738
|
0.612
|
0.280
|
0.000
|
15.727
|
8.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.