Hg_chrom3_TN10mRNA_6879
Organism: Heterodera glycines Gene Locus: chr3:14069748-14072287 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.19 | 1.311 | 0.882 | 1.395 | 0.537 | 0.609 | 0.581 | 1.344 | 1.351 | 1.233 | 1.642 | 1.615 | 0.671 | 0.807 | 1.13 | 0.343 | 0.916 | 1.252 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6518
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.555
|
0.131
|
0.034
|
0.670
|
0.178
|
0.287
|
0.112
|
0.013
|
0.167
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.742|GO:0110165_0.733|GO:0005622_0.646|GO:0008150_0.646|GO:0005737_0.582|GO:0009987_0.526|GO:0043226_0.525|GO:0043229_0.509
|
IPR000210+16-123_25-102_25-133+|IPR002083+292-425_296-427_297-406+|IPR008974+283-430+|IPR011333+3-159_6-122+|IPR011705+137-247_142-244+
|
SM00061+297-406+|SM00225+25-133+|SM00875+137-247+
|
PF00651+16-123+BTB/POZ_domain|PF07707+142-244+BTB_And_C-terminal_Kelch|PF22486+296-427+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+159-265+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+11-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
48595.670
|
4.770
|
-12.500
|
28.837
|
11.163
|
46.047
|
53.953
|
13.256
|
15.581
|
47.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
98.634
|
11.319
|
18.111
|
15.761
|
33.139
|
26.236
|
21.213
|
10.175
|
0.000
|
380.540
|
217.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.041
|
— | — |
-1.474
|
1.206
|
-9.362
|
4.835
|
— | — | — |
No JSON data available for plots.