Hg_chrom3_TN10mRNA_6882
Organism: Heterodera glycines Gene Locus: chr3:14089667-14092820 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 1.182 | 1.418 | 1.11 | 1.384 | 0.522 | 0.545 | 0.339 | 1.431 | 1.26 | 1.412 | 1.097 | 1.648 | 0.619 | 1.003 | 1.09 | 0.528 | 0.899 | 1.304 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6521
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.777
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.622
|
0.238
|
0.014
|
0.494
|
0.087
|
0.191
|
0.057
|
0.037
|
0.254
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.767|GO:0110165_0.757|GO:0005622_0.676|GO:0008150_0.656|GO:0005737_0.570|GO:0009987_0.548|GO:0043226_0.503
|
IPR000210+9-116_18-95_18-126+|IPR002083+285-417_286-420_289-406_290-398_438-573_443-554_443-575+|IPR008974+276-425_426-582+|IPR011333+2-127_4-115+|IPR011705+130-240_135-237+
|
SM00061+290-398_443-554+|SM00225+18-126+|SM00875+130-240+
|
PF00651+9-116+BTB/POZ_domain|PF07707+135-237+BTB_And_C-terminal_Kelch|PF22486+289-406_443-575+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+152-258+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+3-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-590
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
67347.140
|
5.103
|
-9.000
|
31.017
|
10.678
|
48.983
|
51.017
|
14.915
|
16.102
|
47.119
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
57.302
|
19.646
|
57.455
|
37.624
|
28.333
|
14.045
|
28.059
|
9.420
|
0.000
|
177.727
|
101.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.317
|
0.801
|
-0.500
|
— |
-0.997
|
1.005
|
— |
1.713
|
-8.235
|
6.091
|
— | — | — |
No JSON data available for plots.