Hg_chrom3_TN10mRNA_6885
Organism: Heterodera glycines Gene Locus: chr3:14108183-14109528 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.544 | 0.515 | 0.322 | 1.373 | 0.664 | 1.929 | 0.685 | 3.54 | 0.59 | 0.897 | 0.737 | 1.301 | 1.721 | 1.702 | 1.445 | 0.379 | 0.58 | 1.073 | 0.34 | 0.651 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6524
|
— | — |
1.111
|
1.000
|
— |
1.000
|
2.000
|
— |
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.845
|
0.122
|
0.013
|
0.353
|
0.028
|
0.009
|
0.012
|
0.002
|
0.066
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002011
|
3.000
|
1.000
|
Hsc_gene_14263.t1
|
— | — | — |
CAD7280764.1 unnamed protein product [Notodromas monacha];CAG0920916.1 unnamed protein product [Notodromas monacha]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0065007_0.895|GO:0050789_0.887|GO:0008152_0.885|GO:0009987_0.879|GO:0050794_0.877|GO:0009058_0.872|GO:0044237_0.871|GO:0044238_0.864|GO:0032501_0.847|GO:0044249_0.847|GO:0019222_0.835|GO:0043170_0.833|GO:0080090_0.833|GO:0009059_0.831|GO:0010467_0.830|GO:0031323_0.830|GO:0032502_0.828|GO:0048856_0.828|GO:0006139_0.822|GO:0007275_0.820|GO:0060255_0.818|GO:0005575_0.814|GO:0110165_0.814|GO:0034654_0.813|GO:0016070_0.809|GO:0090304_0.809|GO:0009889_0.807|GO:0031326_0.807|GO:0032774_0.807|GO:0141187_0.807|GO:0010556_0.805|GO:0048731_0.802|GO:0010468_0.801|GO:0019219_0.796|GO:0051252_0.796|GO:0030154_0.785|GO:0048513_0.785|GO:0048869_0.785|GO:0048519_0.784|GO:0005622_0.783|GO:0006351_0.783|GO:0006355_0.776|GO:2001141_0.776|GO:0048523_0.774|GO:0043226_0.757|GO:0007399_0.747|GO:0048468_0.744|GO:0043229_0.742|GO:0022008_0.739|GO:0051239_0.732|GO:0050793_0.729|GO:0016020_0.728|GO:0048699_0.726|GO:0009653_0.722|GO:0030182_0.718|GO:0005634_0.713|GO:0043227_0.713|GO:0043231_0.713|GO:0045595_0.712|GO:0051093_0.699|GO:0009887_0.698|GO:0048646_0.697|GO:0051241_0.695|GO:0003006_0.691|GO:0007389_0.691|GO:0022414_0.691|GO:0003002_0.690|GO:0048608_0.690|GO:0061458_0.690|GO:0007423_0.689|GO:0045596_0.689|GO:0001654_0.687|GO:0003008_0.687|GO:0048880_0.687|GO:0150063_0.687|GO:0009791_0.686|GO:0061061_0.684|GO:0007548_0.682|GO:0016071_0.681|GO:0045165_0.680|GO:0090596_0.680|GO:1903311_0.680|GO:0045137_0.679|GO:0048736_0.679|GO:0006396_0.678|GO:0006397_0.678|GO:0008406_0.678|GO:0042063_0.678|GO:0007517_0.677|GO:0008380_0.677|GO:0035107_0.677|GO:0000375_0.676|GO:0000377_0.676|GO:0000398_0.676|GO:0048592_0.676|GO:0050877_0.676|GO:0000380_0.675|GO:0043484_0.675|GO:0060541_0.675|GO:0001708_0.674|GO:0007600_0.674|GO:0008584_0.674|GO:0046546_0.674|GO:0046661_0.674|GO:0048024_0.674|GO:0050684_0.674|GO:0000381_0.673|GO:0010001_0.673|GO:0001742_0.670|GO:0001745_0.670|GO:0001751_0.670|GO:0001754_0.670|GO:0002165_0.670|GO:0007424_0.670|GO:0007438_0.670|GO:0007444_0.670|GO:0007469_0.670|GO:0007472_0.670|GO:0007476_0.670|GO:0007525_0.670|GO:0007552_0.670|GO:0007560_0.670|GO:0007605_0.670|GO:0008586_0.670|GO:0009886_0.670|GO:0009996_0.670|GO:0010453_0.670|GO:0010454_0.670|GO:0021782_0.670|GO:0030539_0.670|GO:0035114_0.670|GO:0035120_0.670|GO:0035153_0.670|GO:0035154_0.670|GO:0035155_0.670|GO:0035202_0.670|GO:0035214_0.670|GO:0035220_0.670|GO:0035277_0.670|GO:0035309_0.670|GO:0035310_0.670|GO:0042659_0.670|GO:0045465_0.670|GO:0045466_0.670|GO:0046530_0.670|GO:0048098_0.670|GO:0048644_0.670|GO:0048707_0.670|GO:0048737_0.670|GO:0048749_0.670|GO:0048806_0.670|GO:0050954_0.670|GO:0060573_0.670|GO:0060581_0.670
|
IPR013087+110-131_137-159_137-164_139-159_165-188_193-216_195-216+|IPR036236+110-164_159-211+
|
SM00355+110-131_137-159_165-188_193-216+
|
PF00096+139-159+Zinc_finger,_C2H2_type
|
— |
PTHR24394+90-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
218-226
|
1.000
|
1-217
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
25249.250
|
10.076
|
22.000
|
24.779
|
15.929
|
40.708
|
59.292
|
19.027
|
5.752
|
49.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.032
|
1.792
|
2.340
|
2.240
|
0.860
|
0.000
|
0.404
|
0.280
|
3.084
|
3.608
|
3.383
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.